ヒシキ　テルヨシ   Hishiki Teruyoshi   日紫喜　光良    所属   東邦大学  理学部 情報科学科    職種   准教授
論文種別	原著
言語種別	英語
査読の有無	査読あり
表題	Gene-L'EXPO: a tool to extract knowledge From transcriptomes and find 'Literature-Sparse' relationships between genes and tissues.
掲載誌名	正式名：AMIA Annual Symposium Proceedings 略　 称：AMIA Annu Symp Proc ISSNコード：1942-597X
巻・号・頁	(1),pp.313-317
著者・共著者	Hishiki T, Tamada I, Okubo K.
担当区分	筆頭著者
発行年月	2008/11
概要	The increasing volume and diversity of transcriptome data in the public domain offer an opportunity to advance new questions and hypotheses. We anticipate that tools that can visualize the gap in the distribution of information between the scientific literature and actual data would prompt such questions. We focused on the roles played by various genes in tissues, and have developed a database that contrasts information on gene expression in tissues with PubMed text and transcriptome data. Data pairs of tissues and the genes that might be expressed there were automatically extracted from text with vocabularies for the genes and tissues. The anatomical categories of various expressed sequence tag (EST) libraries were also automatically determined. These types of information were linked using the hierarchical structure of the Metathesaurus in UMLS. The database, named Gene-L'EXPO, is accessible at http://www.genelexpo.jp.
文献番号	18999036/PubMedID